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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs4522091 chr10:874116 G/T 3.9E-5 404 15.13 17.75 12.17 KM Plot
LGG rs4526665 chr1:169637771 A/G 2.95E-11 401 15.17 18.03 5.93 KM Plot
LGG rs4537040 chr5:93982788 A/G 4.32E-5 407 14.78 17.63 9.8 KM Plot
LGG rs4553387 chr11:61217125 G/T 8.01E-5 405 16.68 17.67 14.5 KM Plot
LGG rs45574737 chr16:67470327 A/G 0.000119 406 15.33 15.13 19.2 KM Plot
LGG rs4561099 chr10:64041163 T/C 0.000168 401 12.03 16.23 15.73 KM Plot
LGG rs4609734 chr14:20748830 T/A 2.3E-5 387 15.73 15.7 8.07 KM Plot
LGG rs4626190 chr4:84451666 C/T 6.66E-16 403 14.9 18.27 5.17 KM Plot
LGG rs4631561 chr9:27203078 A/G 3.06E-6 407 0 13.03 15.37 KM Plot
LGG rs4639205 chr5:155948656 A/G 5.22E-6 403 15.63 15.32 13.5 KM Plot
LGG rs4672045 chr2:55658147 G/A 5.78E-5 398 12.92 16.6 15.2 KM Plot
LGG rs4675591 chr2:207076496 G/A 0 399 3.2 16.77 15.17 KM Plot
LGG rs4683836 chr3:100918453 G/C 7.74E-5 394 15.72 15.2 12.77 KM Plot
LGG rs4683867 chr3:100909312 A/C 7.12E-6 402 15.72 14.73 8.43 KM Plot
LGG rs4683871 chr3:100912997 G/A 2.3E-7 407 15.67 14.8 10.07 KM Plot